TRDGlobalTrackingSpec.cxx

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// Copyright 2019-2020 CERN and copyright holders of ALICE O2.
// See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
// All rights not expressly granted are reserved.
//
// This software is distributed under the terms of the GNU General Public
// License v3 (GPL Version 3), copied verbatim in the file "COPYING".
//
// In applying this license CERN does not waive the privileges and immunities
// granted to it by virtue of its status as an Intergovernmental Organization
// or submit itself to any jurisdiction.
 
 
#include <TMap.h>
#include <TObjString.h>
#include "TRDWorkflow/TRDGlobalTrackingSpec.h"
#include "TRDBase/Geometry.h"
#include "DetectorsCommonDataFormats/DetectorNameConf.h"
#include "DetectorsBase/GeometryManager.h"
#include "DetectorsBase/GlobalParams.h"
#include "DetectorsBase/Propagator.h"
#include "ReconstructionDataFormats/TrackTPCITS.h"
#include "ReconstructionDataFormats/Vertex.h"
#include "DataFormatsTRD/Tracklet64.h"
#include "DataFormatsTRD/CalibratedTracklet.h"
#include "DataFormatsTRD/TriggerRecord.h"
#include "DataFormatsTRD/Constants.h"
#include "TPCBase/ParameterElectronics.h"
#include "DataFormatsTRD/RecoInputContainer.h"
#include "GPUWorkflowHelper/GPUWorkflowHelper.h"
#include "Framework/ConfigParamRegistry.h"
#include "Framework/CCDBParamSpec.h"
#include "Framework/DeviceSpec.h"
#include "DataFormatsTPC/WorkflowHelper.h"
#include "TPCReconstruction/TPCFastTransformHelperO2.h"
#include "CommonConstants/GeomConstants.h"
#include "ITStracking/IOUtils.h"
#include "ITSBase/GeometryTGeo.h"
#include "DataFormatsITSMFT/Cluster.h"
#include "DataFormatsFT0/RecPoints.h"
#include "ITSReconstruction/RecoGeomHelper.h"
#include "ITSMFTReconstruction/ClustererParam.h"
#include "FT0Reconstruction/InteractionTag.h"
#include "DataFormatsGlobalTracking/TrackTuneParams.h"
 
// GPU header
#include "GPUReconstruction.h"
#include "GPUChainTracking.h"
#include "GPUChainTrackingGetters.inc"
#include "GPUO2InterfaceConfiguration.h"
#include "GPUO2InterfaceUtils.h"
#include "GPUSettings.h"
#include "GPUO2ConfigurableParam.h"
#include "GPUDataTypesIO.h"
#include "GPUTRDDef.h"
#include "GPUTRDTrack.h"
#include "GPUTRDTrackletWord.h"
#include "GPUTRDInterfaces.h"
#include "GPUTRDGeometry.h"
#include "GPUConstantMem.h"
#include "GPUTRDTrackerKernels.h"
 
#ifdef ENABLE_UPGRADES
#include "ITS3Reconstruction/IOUtils.h"
#endif
 
#include <regex>
#include <algorithm>
#include <numeric>
 
using namespace o2::framework;
using namespace o2::gpu;
using namespace o2::globaltracking;
using namespace o2::trd::constants;
 
using GTrackID = o2::dataformats::GlobalTrackID;
 
namespace o2
{
namespace trd
{
 
using TrackTunePar = o2::globaltracking::TrackTuneParams;
 
void TRDGlobalTracking::init(InitContext& ic)
{
  o2::base::GRPGeomHelper::instance().setRequest(mGGCCDBRequest);
  mTimer.Stop();
  mTimer.Reset();
}
 
void TRDGlobalTracking::updateTimeDependentParams(ProcessingContext& pc)
{
  o2::base::GRPGeomHelper::instance().checkUpdates(pc);
  mTPCVDriftHelper.extractCCDBInputs(pc);
 
  auto const& raw = pc.inputs().get<const char*>("corrMap");
  mTPCCorrMaps = &o2::gpu::TPCFastTransformPOD::get(raw);
  float lumiCTP = mRequestCTPLumi ? pc.inputs().get<float>("lumiCTP") : 0;
 
  // pc.inputs().get<TopologyDictionary*>("cldict"); // called by the RecoContainer to trigger finaliseCCDB
  static bool initOnceDone = false;
  if (!initOnceDone) { // this params need to be queried only once
    initOnceDone = true;
    // init-once stuff
 
    auto geo = Geometry::instance();
    o2::its::GeometryTGeo::Instance()->fillMatrixCache(o2::math_utils::bit2Mask(o2::math_utils::TransformType::T2GRot) | o2::math_utils::bit2Mask(o2::math_utils::TransformType::T2L));
    geo->createPadPlaneArray();
    geo->createClusterMatrixArray();
    mFlatGeo = std::make_unique<GeometryFlat>(*geo);
 
    GPURecoStepConfiguration cfgRecoStep;
    cfgRecoStep.steps = gpudatatypes::RecoStep::NoRecoStep;
    cfgRecoStep.inputs.clear();
    cfgRecoStep.outputs.clear();
    mRec = GPUReconstruction::CreateInstance("CPU", true);
 
    GPUO2InterfaceConfiguration config;
    config.ReadConfigurableParam(config);
    config.configGRP.solenoidBzNominalGPU = GPUO2InterfaceUtils::getNominalGPUBz(*o2::base::GRPGeomHelper::instance().getGRPMagField());
    config.configProcessing.o2PropagatorUseGPUField = false;
    mRecoParam.init(o2::base::Propagator::Instance()->getNominalBz(), &config.configReconstruction);
 
    mRec->SetSettings(&config.configGRP, &config.configReconstruction, &config.configProcessing, &cfgRecoStep);
 
    mChainTracking = mRec->AddChain<GPUChainTracking>();
    mChainTracking->SetO2Propagator(o2::base::Propagator::Instance());
 
    mTracker = new GPUTRDTracker();
    mTracker->SetNCandidates(mRec->GetProcessingSettings().trdNCandidates); // must be set before initialization
    if (mStrict && mRec->GetProcessingSettings().trdNCandidates == 1) {
      LOG(error) << "Strict matching mode requested, but tracks with another close hypothesis will not be rejected. Please set trdNCandidates to at least 3.";
    }
    mTracker->SetProcessPerTimeFrame(true);
    mTracker->SetGenerateSpacePoints(false); // set to true to force space point calculation by the TRD tracker itself
 
    mRec->RegisterGPUProcessor(mTracker, false);
    mChainTracking->SetTRDGeometry(std::move(mFlatGeo));
    mChainTracking->SetTRDRecoParam(&mRecoParam);
    if (mRec->Init()) {
      LOG(fatal) << "GPUReconstruction could not be initialized";
    }
 
    mTracker->PrintSettings();
    LOG(info) << "Strict matching mode is " << ((mStrict) ? "ON" : "OFF");
    LOGF(info, "The search road in time for ITS-TPC tracks is set to %.1f sigma and %.2f us are added to it on top",
         mRec->GetParam().rec.trd.nSigmaTerrITSTPC, mRec->GetParam().rec.trd.addTimeRoadITSTPC);
 
    if (mWithPID) {
      mBase = getTRDPIDPolicy(mPolicy);
      mBase->init(pc);
      mBase->setLocalGainFactors(pc.inputs().get<o2::trd::LocalGainFactor*>("localgainfactors").get());
    }
 
    pc.inputs().get<std::array<int, constants::MAXCHAMBER>*>("chamberstatus"); // called to trigger finaliseCCDB
    // pc.inputs().get<o2::trd::PadStatus*>("padstatus");                         // called to trigger finaliseCCDB
  }
 
  const auto& trackTune = TrackTuneParams::Instance();
  float scale = lumiCTP;
  if (scale < 0.f) {
    scale = 0.f;
  }
  mCovDiagInner = trackTune.getCovInnerTotal(scale);
  mCovDiagOuter = trackTune.getCovOuterTotal(scale);
 
  if (mTPCVDriftHelper.isUpdated()) {
    auto& elParam = o2::tpc::ParameterElectronics::Instance();
    mTPCTBinMUS = elParam.ZbinWidth;
    mTPCTBinMUSInv = 1. / mTPCTBinMUS;
    auto& vd = mTPCVDriftHelper.getVDriftObject();
    mTPCVdrift = vd.getVDrift();
    mTPCTDriftOffset = vd.getTimeOffset();
    LOGP(info, "Updating TPC VDrift factor of {} wrt reference {} and DriftTimeOffset correction {} wrt {} from source {}",
         vd.corrFact, vd.refVDrift, vd.timeOffsetCorr, vd.refTimeOffset, mTPCVDriftHelper.getSourceName());
    mTracker->SetTPCVdrift(mTPCVdrift);
    mTracker->SetTPCTDriftOffset(mTPCTDriftOffset);
    mTPCVDriftHelper.acknowledgeUpdate();
  }
}
 
void TRDGlobalTracking::finaliseCCDB(ConcreteDataMatcher& matcher, void* obj)
{
  if (o2::base::GRPGeomHelper::instance().finaliseCCDB(matcher, obj)) {
    return;
  }
  if (mTPCVDriftHelper.accountCCDBInputs(matcher, obj)) {
    return;
  }
  if (matcher == ConcreteDataMatcher("ITS", "CLUSDICT", 0)) {
    LOG(info) << "cluster dictionary updated";
    mITSDict = (const o2::itsmft::TopologyDictionary*)obj;
    return;
  }
#ifdef ENABLE_UPGRADES
  if (matcher == ConcreteDataMatcher("IT3", "CLUSDICT", 0)) {
    LOG(info) << "it3 cluster dictionary updated";
    mIT3Dict = (const o2::its3::TopologyDictionary*)obj;
    return;
  }
#endif
  if (matcher == ConcreteDataMatcher("TRD", "CHAMBERSTATUS", 0)) {
    LOG(info) << "chamber status object updated";
    const std::array<int, constants::MAXCHAMBER>* chamberStatus = (const std::array<int, constants::MAXCHAMBER>*)obj;
    for (int iDet = 0; iDet < constants::MAXCHAMBER; iDet++) {
      if ((*chamberStatus)[iDet] == 3) {
        mTracker->SetChamberStatus(iDet, false); // chamber is good
      } else {
        mTracker->SetChamberStatus(iDet, true); // chamber is bad
      }
    }
    return;
  }
  /*if (matcher == ConcreteDataMatcher("TRD", "PADSTATUS", 0)) {
    LOG(info) << "pad status object updated";
    const o2::trd::PadStatus* padStatus = (const o2::trd::PadStatus*)obj;
    for (int iDet = 0; iDet < constants::MAXCHAMBER; iDet++) {
      for (int iCol = 0; iCol < constants::NCOLUMN; iCol++) {
        for (int iRow = 0; iRow < ((iDet % 30) / 6 == 2 ? constants::NROWC0 : constants::NROWC1); iRow++) {
          if (padStatus->isMasked(iDet, iCol, iRow) || padStatus->isNotConnected(iDet, iCol, iRow)) {
            mTracker->SetPadStatus(iDet * constants::NCOLUMN * constants::NROWC1 + iCol * constants::NROWC1 + iRow, true); // pad is masked
          } else {
            mTracker->SetPadStatus(iDet * constants::NCOLUMN * constants::NROWC1 + iCol * constants::NROWC1 + iRow, false); // pad is not masked
          }
        }
      }
    }
    return;
  }*/
}
 
void TRDGlobalTracking::fillMCTruthInfo(const TrackTRD& trk, o2::MCCompLabel lblSeed, std::vector<o2::MCCompLabel>& lblContainerTrd, std::vector<o2::MCCompLabel>& lblContainerMatch, const o2::dataformats::MCTruthContainer<o2::MCCompLabel>* trkltLabels) const
{
  // Check MC labels of the TRD tracklets attached to the track seed.
  // Set TRD track label to the most frequent tracklet label.
  // Fake flag is set if either not all TRD tracklets have most frequent label
  // or if the seeding label is different from the most frequent TRD label.
  // In case multiple tracklet labels occur most often we choose the one which matches the label of the seed, or,
  // if that is not the case one of the most frequent labels is chosen arbitrarily
  LOG(debug) << "Checking seed with label: " << lblSeed;
  std::unordered_map<o2::MCCompLabel, unsigned int> labelCounter;
  int maxOccurences = 0;
  for (int iLy = 0; iLy < constants::NLAYER; ++iLy) {
    auto trkltIndex = trk.getTrackletIndex(iLy);
    if (trkltIndex == -1) {
      // no tracklet in this layer
      continue;
    }
    const auto& lblsTrklt = trkltLabels->getLabels(trkltIndex);
    for (const auto lblTrklt : lblsTrklt) {
      int nOcc = ++labelCounter[lblTrklt];
      if (nOcc > maxOccurences) {
        maxOccurences = nOcc;
      }
    }
  }
  o2::MCCompLabel mostFrequentLabel;
  for (const auto& [lbl, count] : labelCounter) {
    LOG(debug) << "Label " << lbl << " occured " << count << " times.";
    if (count == maxOccurences) {
      if (lblSeed == lbl) {
        // most frequent label matches seed label
        mostFrequentLabel = lbl;
        mostFrequentLabel.setFakeFlag(maxOccurences != trk.getNtracklets());
        lblContainerTrd.push_back(mostFrequentLabel);
        lblContainerMatch.push_back(lblSeed); // is not fake by definition, since the seed label matches the TRD track label
        return;
      } else {
        // maybe multiple labels occur with the same frequency and the next one might match the seed?
        mostFrequentLabel = lbl;
      }
    }
  }
  mostFrequentLabel.setFakeFlag(maxOccurences != trk.getNtracklets());
  lblContainerTrd.push_back(mostFrequentLabel);
  lblSeed.setFakeFlag(lblSeed != mostFrequentLabel);
  lblContainerMatch.push_back(lblSeed);
}
 
void TRDGlobalTracking::fillTrackTriggerRecord(const std::vector<TrackTRD>& tracks, std::vector<TrackTriggerRecord>& trigRec, const gsl::span<const o2::trd::TriggerRecord>& trackletTrigRec) const
{
  // after the tracking is done we assemble here a TrackTriggerRecord similar to the TriggerRecord
  // which for each TRD trigger stores the index of the first found track and the total number of tracks
 
  int nTracksCurr = 0;
  int iTrackFirst = 0;
  int prevCollisionID = -1;
 
  for (size_t iTrk = 0; iTrk < tracks.size(); ++iTrk) {
    const auto& trk = tracks[iTrk];
    auto collisionID = trk.getCollisionId();
    if (iTrk == 0) {
      prevCollisionID = collisionID;
    }
    if (collisionID != prevCollisionID) {
      // we have a track from a new trigger within the same TF
      trigRec.emplace_back(trackletTrigRec[prevCollisionID].getBCData(), iTrackFirst, nTracksCurr);
      iTrackFirst += nTracksCurr;
      prevCollisionID = collisionID;
      nTracksCurr = 0;
    }
    ++nTracksCurr;
  }
  if (nTracksCurr > 0) {
    // this is the last trigger record for this TF, we can take the collision ID from the last track
    trigRec.emplace_back(trackletTrigRec[tracks.back().getCollisionId()].getBCData(), iTrackFirst, nTracksCurr);
  }
}
 
void TRDGlobalTracking::run(ProcessingContext& pc)
{
  mTimer.Start(false);
  o2::globaltracking::RecoContainer inputTracks;
  inputTracks.collectData(pc, *mDataRequest);
  updateTimeDependentParams(pc);
  storeConfigs(pc);
  mChainTracking->ClearIOPointers();
 
  mTPCClusterIdxStruct = &inputTracks.inputsTPCclusters->clusterIndex;
  mTPCRefitter = std::make_unique<o2::gpu::GPUO2InterfaceRefit>(mTPCClusterIdxStruct, mTPCCorrMaps, o2::base::Propagator::Instance()->getNominalBz(), inputTracks.getTPCTracksClusterRefs().data(), 0, inputTracks.clusterShMapTPC.data(), inputTracks.occupancyMapTPC.data(), inputTracks.occupancyMapTPC.size(), nullptr, o2::base::Propagator::Instance());
  auto tmpInputContainer = getRecoInputContainer(pc, &mChainTracking->mIOPtrs, &inputTracks, mUseMC);
  auto tmpContainer = GPUWorkflowHelper::fillIOPtr(mChainTracking->mIOPtrs, inputTracks, mUseMC, nullptr, GTrackID::getSourcesMask("TRD"), mTrkMask, GTrackID::mask_t{GTrackID::MASK_NONE});
  mTrackletsRaw = inputTracks.getTRDTracklets();
  mTrackletsCalib = inputTracks.getTRDCalibratedTracklets();
  mTPCTracksArray = inputTracks.getTPCTracks();
  if (GTrackID::includesDet(GTrackID::DetID::ITS, mTrkMask)) {
    // load ITS tracks and clusters needed for the refit
    mITSTracksArray = inputTracks.getITSTracks();
    mITSTrackClusIdx = inputTracks.getITSTracksClusterRefs();
    mITSABRefsArray = inputTracks.getITSABRefs();
    mITSABTrackClusIdx = inputTracks.getITSABClusterRefs();
    int nLr = mDataRequest->getITSPerLayer() ? o2::globaltracking::MaxITSLayers : 1;
    mITSClustersArray.init(nLr);
    for (int lr = 0; lr < nLr; lr++) { // with a single (monolithic) input all clusters are in the layer slot 0
      mITSClustersArray.beginLayer(lr);
      const auto clusITS = inputTracks.getITSClusters(lr);
      auto pattIt = inputTracks.getITSClustersPatterns(lr).begin();
      mITSClustersArray.getClusters().reserve(mITSClustersArray.size() + clusITS.size());
#ifdef ENABLE_UPGRADES
      if (o2::GlobalParams::Instance().withITS3) {
        o2::its3::ioutils::convertCompactClusters(clusITS, pattIt, mITSClustersArray.getClusters(), mIT3Dict);
      } else {
        o2::its::ioutils::convertCompactClusters(clusITS, pattIt, mITSClustersArray.getClusters(), mITSDict);
      }
#else
      o2::its::ioutils::convertCompactClusters(clusITS, pattIt, mITSClustersArray.getClusters(), mITSDict);
#endif
    }
    mITSClustersArray.finalize();
  }
 
  LOGF(info, "There are %i tracklets in total from %i trigger records", mChainTracking->mIOPtrs.nTRDTracklets, mChainTracking->mIOPtrs.nTRDTriggerRecords);
  LOGF(info, "As input seeds are available: %i ITS-TPC matched tracks and %i TPC tracks", mChainTracking->mIOPtrs.nTracksTPCITSO2, mChainTracking->mIOPtrs.nOutputTracksTPCO2);
 
  std::vector<o2::MCCompLabel> matchLabelsITSTPC;
  std::vector<o2::MCCompLabel> trdLabelsITSTPC;
  std::vector<o2::MCCompLabel> matchLabelsTPC;
  std::vector<o2::MCCompLabel> trdLabelsTPC;
  gsl::span<const o2::MCCompLabel> tpcTrackLabels;
  gsl::span<const o2::MCCompLabel> itstpcTrackLabels;
  if (mUseMC) {
    if (GTrackID::includesSource(GTrackID::Source::ITSTPC, mTrkMask)) {
      itstpcTrackLabels = inputTracks.getTPCITSTracksMCLabels();
    }
    if (GTrackID::includesSource(GTrackID::Source::TPC, mTrkMask)) {
      tpcTrackLabels = inputTracks.getTPCTracksMCLabels();
    }
  }
  mTracker->Reset();
  mRec->PrepareEvent();
  mRec->SetupGPUProcessor(mTracker, true);
 
  // check trigger record filter setting
  bool foundFilteredTrigger = false;
  for (unsigned int iTrig = 0; iTrig < mChainTracking->mIOPtrs.nTRDTriggerRecords; ++iTrig) {
    if (mChainTracking->mIOPtrs.trdTrigRecMask[iTrig] == 0) {
      foundFilteredTrigger = true;
    }
    LOGF(debug, "TRD trigger %u added with time %f", iTrig, mChainTracking->mIOPtrs.trdTriggerTimes[iTrig]);
  }
  if (!foundFilteredTrigger && mTrigRecFilter) {
    static bool warningSent = false;
    if (!warningSent) {
      LOG(warning) << "Trigger filtering requested, but no TRD trigger is actually masked. Can be that none needed to be masked or that the setting was not active for the tracklet transformer";
      warningSent = true;
    }
  } else if (foundFilteredTrigger && !mTrigRecFilter) {
    LOG(error) << "Trigger filtering is not requested, but masked TRD triggers are found. Rerun tracklet transformer without trigger filtering";
  }
 
  // load input tracks
  const auto& trackTune = TrackTuneParams::Instance();
  LOG(debug) << "Start loading input seeds into TRD tracker";
  int nTracksLoadedITSTPC = 0;
  int nTracksLoadedTPC = 0;
  // load ITS-TPC matched tracks
  for (unsigned int iTrk = 0; iTrk < mChainTracking->mIOPtrs.nTracksTPCITSO2; ++iTrk) {
    const auto& trkITSTPC = mChainTracking->mIOPtrs.tracksTPCITSO2[iTrk];
    GPUTRDTracker::HelperTrackAttributes trkAttribs;
    trkAttribs.mTime = trkITSTPC.getTimeMUS().getTimeStamp();
    trkAttribs.mTimeAddMax = trkITSTPC.getTimeMUS().getTimeStampError() * mRec->GetParam().rec.trd.nSigmaTerrITSTPC + mRec->GetParam().rec.trd.addTimeRoadITSTPC;
    trkAttribs.mTimeSubMax = trkITSTPC.getTimeMUS().getTimeStampError() * mRec->GetParam().rec.trd.nSigmaTerrITSTPC + mRec->GetParam().rec.trd.addTimeRoadITSTPC;
    GPUTRDTrack trkLoad(trkITSTPC);
    // no TrackTuneParams for outerParam of ITS-TPC tracks: if needed, they are corrected already in the ITS-TPC matching refit
    auto trackGID = GTrackID(iTrk, GTrackID::ITSTPC);
    if (mTracker->LoadTrack(trkLoad, trackGID.getRaw(), true, &trkAttribs)) {
      continue;
    }
    ++nTracksLoadedITSTPC;
    LOGF(debug, "Loaded ITS-TPC track %i with time %f. Window from %f to %f", nTracksLoadedITSTPC, trkAttribs.mTime, trkAttribs.mTime - trkAttribs.mTimeSubMax, trkAttribs.mTime + trkAttribs.mTimeAddMax);
  }
  // load TPC-only tracks
  for (unsigned int iTrk = 0; iTrk < mChainTracking->mIOPtrs.nOutputTracksTPCO2; ++iTrk) {
    if (mChainTracking->mIOPtrs.tpcLinkITS && mChainTracking->mIOPtrs.tpcLinkITS[iTrk] != -1) {
      // this TPC tracks has already been matched to ITS and the ITS-TPC track has already been loaded in the tracker
      continue;
    }
    const auto& trkTpc = mChainTracking->mIOPtrs.outputTracksTPCO2[iTrk];
    GPUTRDTracker::HelperTrackAttributes trkAttribs;
    trkAttribs.mTime = trkTpc.getTime0() * mTPCTBinMUS - mTPCTDriftOffset; // account for the eventual time bias for TPC tracks time
    trkAttribs.mTimeAddMax = trkTpc.getDeltaTFwd() * mTPCTBinMUS;
    trkAttribs.mTimeSubMax = trkTpc.getDeltaTBwd() * mTPCTBinMUS;
    if (trkTpc.hasASideClustersOnly()) {
      trkAttribs.mSide = -1;
    } else if (trkTpc.hasCSideClustersOnly()) {
      trkAttribs.mSide = 1;
    }
    GPUTRDTrack trkLoad(trkTpc);
    if (!trackTune.sourceLevelTPC) { // correct TPC tracks only if they were not corrected on the source level
      if (trackTune.useTPCOuterCorr) {
        trkLoad.updateParams(trackTune.tpcParOuter);
      }
      if (trackTune.tpcCovOuterType != TrackTuneParams::AddCovType::Disable) {
        trkLoad.updateCov(mCovDiagOuter, trackTune.tpcCovOuterType == TrackTuneParams::AddCovType::WithCorrelations);
      }
    }
    auto trackGID = GTrackID(iTrk, GTrackID::TPC);
    if (mTracker->LoadTrack(trkLoad, trackGID.getRaw(), true, &trkAttribs)) {
      continue;
    }
    ++nTracksLoadedTPC;
    LOGF(debug, "Loaded TPC track %i with time %f. Window from %f to %f", nTracksLoadedTPC, trkAttribs.mTime, trkAttribs.mTime - trkAttribs.mTimeSubMax, trkAttribs.mTime + trkAttribs.mTimeAddMax);
  }
  LOGF(info, "%i tracks are loaded into the TRD tracker. Out of those %i ITS-TPC tracks and %i TPC tracks", nTracksLoadedITSTPC + nTracksLoadedTPC, nTracksLoadedITSTPC, nTracksLoadedTPC);
 
  // Load the FT0 triggered BCs if this is requested
 
  if (mTrkMask[GTrackID::FT0]) { // pile-up tagging was requested
    auto ft0recPoints = inputTracks.getFT0RecPoints();
    uint32_t firstOrbit = 0;
    for (size_t ft0id = 0; ft0id < ft0recPoints.size(); ft0id++) {
      const auto& f0rec = ft0recPoints[ft0id];
      if (ft0id == 0) {
        firstOrbit = f0rec.getInteractionRecord().orbit;
      }
      if (o2::ft0::InteractionTag::Instance().isSelected(f0rec)) {
        uint32_t currentOrbit = f0rec.getInteractionRecord().orbit;
        mTriggeredBCFT0.push_back(f0rec.getInteractionRecord().bc + (currentOrbit - firstOrbit) * o2::constants::lhc::LHCMaxBunches);
      }
    }
  }
 
  mTracker->SetFT0TriggeredBC(mTriggeredBCFT0.data(), mTriggeredBCFT0.size());
 
  // start the tracking
  // mTracker->DumpTracks();
  mChainTracking->DoTRDGPUTracking<GPUTRDTrackerKernels::o2Version>(mTracker);
  // mTracker->DumpTracks();
 
  // finished tracking, now collect the output
  std::vector<TrackTRD> tracksOutITSTPC;
  std::vector<TrackTRD> tracksOutTPC;
  std::vector<TrackTriggerRecord> trackTrigRecITSTPC;
  std::vector<TrackTriggerRecord> trackTrigRecTPC;
  GPUTRDTrack* tracksOutRaw = mTracker->Tracks();
  std::vector<unsigned int> trackIdxArray(mTracker->NTracks()); // track indices sorted by trigger record index
  std::iota(trackIdxArray.begin(), trackIdxArray.end(), 0);
  std::sort(trackIdxArray.begin(), trackIdxArray.end(), [tracksOutRaw](int lhs, int rhs) { return tracksOutRaw[lhs].getCollisionId() < tracksOutRaw[rhs].getCollisionId(); });
 
  std::vector<std::pair<uint8_t, uint8_t>> pileUpDist;
  bool ft0Seen = false;
  if (mTrkMask[GTrackID::FT0]) { // pile-up tagging was requested
    long maxDiffFwd = mTracker->Param().rec.trd.pileupFwdNBC;
    long maxDiffBwd = mTracker->Param().rec.trd.pileupBwdNBC;
    auto ft0recPoints = inputTracks.getFT0RecPoints();
    auto trdTriggers = tmpInputContainer->mTriggerRecords;
    ft0Seen = ft0recPoints.size() > 0;
    pileUpDist.resize(trdTriggers.size(), {0, 0});
    size_t curFT0 = 0;
    for (size_t itrd = 0; itrd < trdTriggers.size(); itrd++) {
      const auto& trig = trdTriggers[itrd];
      uint8_t fwd = 0, bwd = 0;
      for (size_t ft0id = curFT0; ft0id < ft0recPoints.size(); ft0id++) {
        const auto& f0rec = ft0recPoints[ft0id];
        if (o2::ft0::InteractionTag::Instance().isSelected(f0rec)) {
          auto bcdiff = trig.getBCData().toLong() - f0rec.getInteractionRecord().toLong();
          if (bcdiff > maxDiffBwd) {
            curFT0 = ft0id + 1;
            continue;
          }
          if (bcdiff > 0) { // pre-trigger pileup, maxDiffBwd is guaranteed to be < max uint8_t
            if (bwd == 0) {
              bwd = uint8_t(bcdiff);
            }
          } else {
            if (bcdiff < -maxDiffFwd) {
              break;
            }
            fwd = uint8_t(-bcdiff); // post-trigger pileup, maxDiffFwd is guaranteed to be < max uint8_t
          }
        }
      }
      pileUpDist[itrd] = {bwd, fwd};
    }
  }
 
  int nTrackletsAttached = 0; // only used for debug information
  int nTracksFailedTPCTRDRefit = 0;
  int nTracksFailedITSTPCTRDRefit = 0;
  for (int iTrk = 0; iTrk < mTracker->NTracks(); ++iTrk) {
    const auto& trdTrack = mTracker->Tracks()[trackIdxArray[iTrk]];
    if (trdTrack.getCollisionId() < 0) {
      // skip tracks without TRD tracklets (the collision ID for the TRD tracks is initialized to -1 and only changed if a tracklet is attached to the track)
      continue;
    }
    if (mStrict && (trdTrack.getIsAmbiguous() || trdTrack.getReducedChi2() > mTracker->Param().rec.trd.chi2StrictCut)) {
      // skip tracks which have another hypothesis close to the best one or which do are above strict chi2 threshold
      continue;
    }
    if (trdTrack.getNtracklets() < mTracker->Param().rec.trd.nTrackletsMin) {
      continue;
    }
    if (trdTrack.getChi2() / trdTrack.getNtracklets() > mTracker->Param().rec.trd.maxChi2Red) {
      continue;
    }
 
    // Find most probable BCs and RMS for pile-up correction and error. Same BC is assumed for all tracklets
    float maxProb = 0.f;
    // The uncertainty is the RMS wrt the default correction of all possible corrections weighted by their probability
    float sumCorr = 0.f;
    float sumCorr2 = 0.f;
    float sumProb = 0.f;
    for (int iBC = 0; iBC < mTriggeredBCFT0.size(); iBC++) {
      int deltaBC = roundf(mTriggeredBCFT0[iBC] - mChainTracking->mIOPtrs.trdTriggerTimes[trdTrack.getCollisionId()] / o2::constants::lhc::LHCBunchSpacingMUS);
      if (deltaBC <= mRecoParam.getPileUpRangeBefore() || deltaBC >= mRecoParam.getPileUpRangeAfter()) {
        continue;
      }
      // collect the charges
      std::array<int, 6> q0;
      std::array<int, 6> q1;
      for (int iLy = 0; iLy < NLAYER; iLy++) {
        int trkltId = trdTrack.getTrackletIndex(iLy);
        if (trkltId < 0) {
          q0[iLy] = -1;
          q1[iLy] = -1;
        } else {
          q0[iLy] = mTrackletsRaw[trkltId].getQ0();
          q1[iLy] = mTrackletsRaw[trkltId].getQ1();
        }
      }
      // get pile-up probability
      float probBC = mRecoParam.getPileUpProbTrack(deltaBC, q0, q1);
      sumCorr += probBC * deltaBC;
      sumCorr2 += probBC * deltaBC * deltaBC;
      sumProb += probBC;
      if (probBC > maxProb) {
        maxProb = probBC;
        mTCorrPileUp = -deltaBC;
      }
    }
    if (sumProb > 1e-6) {
      mTErrPileUp2 = sumCorr2 / sumProb - 2 * mTCorrPileUp * sumCorr / sumProb + mTCorrPileUp * mTCorrPileUp;
    }
 
    nTrackletsAttached += trdTrack.getNtracklets();
    auto trackGID = trdTrack.getRefGlobalTrackId();
    if (trackGID.includesDet(GTrackID::Source::ITS)) {
      // this track is from an ITS-TPC seed
      tracksOutITSTPC.push_back(trdTrack);
      if (ft0Seen) {
        tracksOutITSTPC.back().setPileUpDistance(pileUpDist[trdTrack.getCollisionId()].first, pileUpDist[trdTrack.getCollisionId()].second);
      } else {
        tracksOutITSTPC.back().setPileUpDistance(mTracker->Param().rec.trd.pileupBwdNBC, mTracker->Param().rec.trd.pileupFwdNBC);
      }
      if (!refitITSTPCTRDTrack(tracksOutITSTPC.back(), mChainTracking->mIOPtrs.trdTriggerTimes[trdTrack.getCollisionId()], &inputTracks) || std::isnan(tracksOutITSTPC.back().getSnp())) {
        tracksOutITSTPC.pop_back();
        ++nTracksFailedITSTPCTRDRefit;
        continue;
      }
      if (mUseMC) {
        fillMCTruthInfo(trdTrack, itstpcTrackLabels[trackGID], trdLabelsITSTPC, matchLabelsITSTPC, inputTracks.getTRDTrackletsMCLabels());
      }
      if (mWithPID) {
        tracksOutITSTPC.back().setSignal(mBase->process(trdTrack, inputTracks, false));
      }
    } else {
      // this track is from a TPC-only seed
      tracksOutTPC.push_back(trdTrack);
      if (ft0Seen) {
        tracksOutTPC.back().setPileUpDistance(pileUpDist[trdTrack.getCollisionId()].first, pileUpDist[trdTrack.getCollisionId()].second);
      } else {
        tracksOutTPC.back().setPileUpDistance(mTracker->Param().rec.trd.pileupBwdNBC, mTracker->Param().rec.trd.pileupFwdNBC);
      }
      if (!refitTPCTRDTrack(tracksOutTPC.back(), mChainTracking->mIOPtrs.trdTriggerTimes[trdTrack.getCollisionId()] - mTCorrPileUp * o2::constants::lhc::LHCBunchSpacingMUS, &inputTracks) || std::isnan(tracksOutTPC.back().getSnp())) {
        tracksOutTPC.pop_back();
        ++nTracksFailedTPCTRDRefit;
        continue;
      }
      if (mUseMC) {
        fillMCTruthInfo(trdTrack, tpcTrackLabels[trackGID], trdLabelsTPC, matchLabelsTPC, inputTracks.getTRDTrackletsMCLabels());
      }
      if (mWithPID) {
        tracksOutTPC.back().setSignal(mBase->process(trdTrack, inputTracks, true));
      }
    }
  }
 
  fillTrackTriggerRecord(tracksOutITSTPC, trackTrigRecITSTPC, tmpInputContainer->mTriggerRecords);
  fillTrackTriggerRecord(tracksOutTPC, trackTrigRecTPC, tmpInputContainer->mTriggerRecords);
 
  LOGF(info, "The TRD tracker found %lu tracks from TPC seeds and %lu tracks from ITS-TPC seeds and attached in total %i tracklets out of %i",
       tracksOutTPC.size(), tracksOutITSTPC.size(), nTrackletsAttached, mChainTracking->mIOPtrs.nTRDTracklets);
  LOGF(info, "Number of tracks failed in the refit: TPC-TRD (%i), ITS-TPC-TRD (%i)", nTracksFailedTPCTRDRefit, nTracksFailedITSTPCTRDRefit);
 
  uint32_t ss = o2::globaltracking::getSubSpec(mStrict ? o2::globaltracking::MatchingType::Strict : o2::globaltracking::MatchingType::Standard);
  if (GTrackID::includesSource(GTrackID::Source::ITSTPC, mTrkMask)) {
    pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MATCH_ITSTPC", 0}, tracksOutITSTPC);
    pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "TRGREC_ITSTPC", 0}, trackTrigRecITSTPC);
    if (mUseMC) {
      pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MCLB_ITSTPC", 0}, matchLabelsITSTPC);
      pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MCLB_ITSTPC_TRD", 0}, trdLabelsITSTPC);
    }
  }
  if (GTrackID::includesSource(GTrackID::Source::TPC, mTrkMask)) {
    pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MATCH_TPC", ss}, tracksOutTPC);
    pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "TRGREC_TPC", ss}, trackTrigRecTPC);
    if (mUseMC) {
      pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MCLB_TPC", ss}, matchLabelsTPC);
      pc.outputs().snapshot(Output{o2::header::gDataOriginTRD, "MCLB_TPC_TRD", ss}, trdLabelsTPC);
    }
  }
 
  mTimer.Stop();
}
 
void TRDGlobalTracking::storeConfigs(ProcessingContext& pc)
{
  static bool first = true;
  if (first) {
    first = false;
    if (pc.services().get<const o2::framework::DeviceSpec>().inputTimesliceId == 0) {
      o2::conf::ConfigurableParam::write(o2::base::NameConf::getConfigOutputFileName(pc.services().get<const o2::framework::DeviceSpec>().name, "GPU_rec_trd"), "GPU_rec_trd");
      TMap md;
      md.SetOwnerKeyValue();
      md.Add(new TObjString(o2::gpu::internal::GPUConfigurableParamGPUSettingsRecTRD::Instance().getName().c_str()), new TObjString(o2::conf::ConfigurableParam::asJSON(o2::gpu::internal::GPUConfigurableParamGPUSettingsRecTRD::Instance().getName()).c_str()));
      pc.outputs().snapshot(Output{"META", "TRDTRACKER", 0}, md);
    }
  }
}
 
bool TRDGlobalTracking::refitITSTPCTRDTrack(TrackTRD& trk, float timeTRD, o2::globaltracking::RecoContainer* recoCont)
{
  auto propagator = o2::base::Propagator::Instance();
 
  // refit ITS-TPC-TRD track outwards to outermost TRD space point (start with ITS outer track parameters)
  auto& outerParam = trk.getOuterParam();
  auto detRefs = recoCont->getSingleDetectorRefs(trk.getRefGlobalTrackId());
  int nCl = -1, clEntry = -1, nClRefit = 0, clRefs[14];
  float chi2Out = 0, timeZErr = 0.;
  bool pileUpOn = trk.hasPileUpInfo(); // distance to farthest collision within the pileup integration time is set
  auto geom = o2::its::GeometryTGeo::Instance();
  auto matCorr = o2::base::Propagator::MatCorrType(mRec->GetParam().rec.trd.matCorrType);
  if (detRefs[GTrackID::ITS].isIndexSet()) { // this is ITS track
    const auto& trkITS = mITSTracksArray[detRefs[GTrackID::ITS]];
    outerParam = trkITS.getParamOut();
    outerParam.setPID(recoCont->getTPCITSTrack(trk.getRefGlobalTrackId()).getPID(), true);
    nCl = trkITS.getNumberOfClusters();
    clEntry = trkITS.getFirstClusterEntry();
    chi2Out = trkITS.getChi2();
    for (int icl = 0; icl < nCl; icl++) {            // clusters are stored from outer to inner layers
      clRefs[icl] = mITSTrackClusIdx[clEntry + icl]; // from outer to inner layer
    }
  } else { // this is ITS-AB track, will need to refit including the ITS part
    const auto& trkITSABref = mITSABRefsArray[detRefs[GTrackID::ITSAB]];
    nCl = trkITSABref.getNClusters();
    clEntry = trkITSABref.getFirstEntry();
    outerParam = recoCont->getTPCITSTrack(trk.getRefGlobalTrackId()); // start from the inner kinematics of ITS-TPC, no need to set PID, will be transferred from ITSTPC track
    outerParam.resetCovariance(100);                                  // reset covariance to something big
    // refit
    for (int icl = 0; icl < nCl; icl++) {                                                              // clusters are stored from inner to outer layers
      const auto& clus = mITSClustersArray[clRefs[nCl - icl - 1] = mITSABTrackClusIdx[clEntry + icl]]; // register in clRefs from outer to inner layer
      if (!outerParam.rotate(geom->getSensorRefAlpha(clus.getSensorID())) ||
          !propagator->propagateToX(outerParam, clus.getX(), propagator->getNominalBz(), o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr)) {
        break;
      }
      chi2Out += outerParam.getPredictedChi2(clus);
      if (!outerParam.update(clus)) {
        break;
      }
      nClRefit++;
    }
    if (nClRefit != nCl) {
      LOG(debug) << "ITS-AB refit outward failed";
      return false;
    }
  }
  // propagate to TPC inner boundary
  float xtogo = 0;
  if (!outerParam.getXatLabR(o2::constants::geom::XTPCInnerRef, xtogo, propagator->getNominalBz(), o2::track::DirOutward) ||
      !propagator->PropagateToXBxByBz(outerParam, xtogo, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr)) {
    LOG(debug) << "Propagation to inner TPC boundary X=" << xtogo << " failed, Xtr=" << outerParam.getX() << " snp=" << outerParam.getSnp();
    return false;
  }
  int retVal = mTPCRefitter->RefitTrackAsTrackParCov(outerParam, mTPCTracksArray[detRefs[GTrackID::TPC]].getClusterRef(), timeTRD * mTPCTBinMUSInv, &chi2Out, true, false); // outward refit
  if (retVal < 0) {
    LOG(debug) << "TPC refit outwards failed";
    return false;
  }
 
  if (!refitTRDTrack(trk, chi2Out, false, false)) {
    LOG(debug) << "TRD refit outwards failed";
    return false;
  }
  // refit ITS-TPC-TRD track inwards to innermost ITS cluster
  // here we also calculate the LT integral for matching to TOF
  float chi2In = 0.f;
  if (!refitTRDTrack(trk, chi2In, true, false)) {
    LOG(debug) << "TRD refit inwards failed";
    return false;
  }
  auto posStart = trk.getXYZGlo();
  retVal = mTPCRefitter->RefitTrackAsTrackParCov(trk, mTPCTracksArray[detRefs[GTrackID::TPC]].getClusterRef(), timeTRD * mTPCTBinMUSInv, &chi2In, false, false); // inward refit
  if (retVal < 0) {
    LOG(debug) << "TPC refit inwards failed";
    return false;
  }
  // if for some reason the track was overshoot over the inner field cage, bring it back w/o material correction and LTintegral update
  if (trk.getX() < o2::constants::geom::XTPCInnerRef &&
      !propagator->PropagateToXBxByBz(trk, o2::constants::geom::XTPCInnerRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, o2::base::Propagator::MatCorrType::USEMatCorrNONE)) {
    LOG(debug) << "BACK-Propagationto inner boundary failed";
    return false;
  }
  auto posEnd = trk.getXYZGlo();
  auto lInt = propagator->estimateLTIncrement(trk, posStart, posEnd);
  trk.getLTIntegralOut().addStep(lInt, trk.getQ2P2());
  // trk.getLTIntegralOut().addX2X0(lInt * mTPCmeanX0Inv); // do we need to account for the material budget here? probably
 
  const auto& trackTune = TrackTuneParams::Instance();
  if (trackTune.tpcCovInnerType != TrackTuneParams::AddCovType::Disable || trackTune.useTPCInnerCorr) { // if needed, correct TPC track in the middle of TPC->ITS refit
    if (!propagator->PropagateToXBxByBz(trk, o2::constants::geom::XTPCInnerRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, &trk.getLTIntegralOut())) {
      LOG(debug) << "Propagation to TPC inner reference X for ITS refit inwards failed";
      return false;
    }
    if (!trackTune.useTPCInnerCorr) {
      trk.updateParams(trackTune.tpcParInner);
    }
    if (trackTune.tpcCovInnerType != TrackTuneParams::AddCovType::Disable) {
      trk.updateCov(mCovDiagInner, trackTune.tpcCovInnerType == TrackTuneParams::AddCovType::WithCorrelations);
    }
  }
 
  nClRefit = 0;
  for (int icl = 0; icl < nCl; icl++) {
    const auto& clus = mITSClustersArray[clRefs[icl]];
    if (!trk.rotate(geom->getSensorRefAlpha(clus.getSensorID())) ||
        // note: here we also calculate the L,T integral (in the inward direction, but this is irrelevant)
        // note: we should eventually use TPC pid in the refit (TODO)
        // note: since we are at small R, we can use field BZ component at origin rather than 3D field
        !propagator->propagateToX(trk, clus.getX(), propagator->getNominalBz(), o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, &trk.getLTIntegralOut())) {
      break;
    }
    chi2In += trk.getPredictedChi2(clus);
    if (!trk.update(clus)) {
      break;
    }
    nClRefit++;
  }
  if (nClRefit != nCl) {
    LOG(debug) << "ITS refit inwards failed";
    return false;
  }
  // We need to update the LTOF integral by the distance to the "primary vertex"
  // We want to leave the track at the the position of its last update, so we do a fast propagation on the TrackPar copy of trfit,
  // and since for the LTOF calculation the material effects are irrelevant, we skip material corrections
  const o2::dataformats::VertexBase vtxDummy; // at the moment using dummy vertex: TODO use MeanVertex constraint instead
  o2::track::TrackPar trkPar(trk);
  if (!propagator->propagateToDCA(vtxDummy.getXYZ(), trkPar, propagator->getNominalBz(), o2::base::Propagator::MAX_STEP, matCorr, nullptr, &trk.getLTIntegralOut())) {
    LOG(error) << "LTOF integral might be incorrect";
  }
  return true;
}
 
bool TRDGlobalTracking::refitTPCTRDTrack(TrackTRD& trk, float timeTRD, o2::globaltracking::RecoContainer* recoCont)
{
  auto propagator = o2::base::Propagator::Instance();
  auto matCorr = o2::base::Propagator::MatCorrType(mRec->GetParam().rec.trd.matCorrType);
  // refit TPC-TRD track outwards toward outermost TRD space point
  auto& outerParam = trk.getOuterParam();
  auto detRefs = recoCont->getSingleDetectorRefs(trk.getRefGlobalTrackId());
  outerParam = trk;
  float chi2Out = 0, timeZErr = 0.;
  bool pileUpOn = trk.hasPileUpInfo();                                                                                                                                      // distance to farthest collision within the pileup integration time is set
  int retVal = mTPCRefitter->RefitTrackAsTrackParCov(outerParam, mTPCTracksArray[detRefs[GTrackID::TPC]].getClusterRef(), timeTRD * mTPCTBinMUSInv, &chi2Out, true, false); // outward refit
  if (retVal < 0) {
    LOG(debug) << "TPC refit outwards failed";
    return false;
  }
  if (pileUpOn) { // account pileup time uncertainty in Z errors
    // timeZErr = mTPCVdrift * trk.getPileUpTimeErrorMUS();
    timeZErr = mTPCVdrift * mTPCVdrift * mTErrPileUp2;
    outerParam.updateCov(timeZErr, o2::track::CovLabels::kSigZ2);
  }
  if (!refitTRDTrack(trk, chi2Out, false, true)) {
    LOG(debug) << "TRD refit outwards failed";
    return false;
  }
 
  // refit TPC-TRD track inwards toward inner TPC radius
  float chi2In = 0.f;
  if (!refitTRDTrack(trk, chi2In, true, true)) {
    LOG(debug) << "TRD refit inwards failed";
    return false;
  }
  auto posStart = trk.getXYZGlo();
  retVal = mTPCRefitter->RefitTrackAsTrackParCov(trk, mTPCTracksArray[detRefs[GTrackID::TPC]].getClusterRef(), timeTRD * mTPCTBinMUSInv, &chi2In, false, false); // inward refit
  if (retVal < 0) {
    LOG(debug) << "TPC refit inwards failed";
    return false;
  }
  if (pileUpOn) { // account pileup time uncertainty in Z errors
    trk.updateCov(timeZErr, o2::track::CovLabels::kSigZ2);
  }
  // if for some reason the track was overshoot over the inner field cage, bring it back w/o material correction and LTintegral update
  if (trk.getX() < o2::constants::geom::XTPCInnerRef &&
      !propagator->PropagateToXBxByBz(trk, o2::constants::geom::XTPCInnerRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, o2::base::Propagator::MatCorrType::USEMatCorrNONE)) {
    LOG(debug) << "BACK-Propagationto inner boundary failed";
    return false;
  }
  auto posEnd = trk.getXYZGlo();
  auto lInt = propagator->estimateLTIncrement(trk, posStart, posEnd);
  trk.getLTIntegralOut().addStep(lInt, trk.getQ2P2());
  // trk.getLTIntegralOut().addX2X0(lInt * mTPCmeanX0Inv); // do we need to account for the material budget here? probably?
 
  if (!propagator->PropagateToXBxByBz(trk, o2::constants::geom::XTPCInnerRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, &trk.getLTIntegralOut())) {
    LOG(debug) << "Final propagation to inner TPC radius failed (not removing the track because of this)";
  }
 
  const auto& trackTune = TrackTuneParams::Instance(); // if needed, correct the track after inward TPC refit
  if (!trackTune.useTPCInnerCorr) {
    trk.updateParams(trackTune.tpcParInner);
  }
  if (trackTune.tpcCovInnerType != TrackTuneParams::AddCovType::Disable) {
    trk.updateCov(mCovDiagInner, trackTune.tpcCovInnerType == TrackTuneParams::AddCovType::WithCorrelations);
  }
 
  propagator->estimateLTFast(trk.getLTIntegralOut(), trk); // guess about initial value for the track integral from the origin
  return true;
}
 
bool TRDGlobalTracking::refitTRDTrack(TrackTRD& trk, float& chi2, bool inwards, bool tpcSA)
{
  auto propagator = o2::base::Propagator::Instance();
 
  int lyStart = inwards ? NLAYER - 1 : 0;
  int direction = inwards ? -1 : 1;
  int lyEnd = inwards ? -1 : NLAYER;
  o2::track::TrackParCov* trkParam = nullptr;
  o2::track::TrackLTIntegral* tofL = nullptr;
  auto matCorr = o2::base::Propagator::MatCorrType(mRec->GetParam().rec.trd.matCorrType);
 
  if (inwards) {
    trkParam = &trk;
    tofL = &trk.getLTIntegralOut();
  } else {
    trkParam = &trk.getOuterParam();
    trkParam->setUserField(trk.getUserField()); // pileup timing info
 
    const auto& trackTune = TrackTuneParams::Instance();
    if ((trackTune.useTPCOuterCorr || trackTune.tpcCovOuterType != TrackTuneParams::AddCovType::Disable) &&
        (!tpcSA || !trackTune.sourceLevelTPC)) { // for TPC standalone make sure correction was not applied ad the source level
      if (!propagator->PropagateToXBxByBz(*trkParam, o2::constants::geom::XTPCOuterRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr)) {
        LOG(debug) << "Propagation to TPC outer reference X for TRD outward refit failed";
        return false;
      }
      if (trackTune.useTPCOuterCorr) {
        trkParam->updateParams(trackTune.tpcParOuter);
      }
      if (trackTune.tpcCovOuterType != TrackTuneParams::AddCovType::Disable) {
        trkParam->updateCov(mCovDiagOuter, trackTune.tpcCovOuterType == TrackTuneParams::AddCovType::WithCorrelations);
      }
    }
  }
 
  if (inwards) {
    // reset covariance to something big for inwards refit
    trkParam->resetCovariance(100);
  }
  for (int iLy = lyStart; iLy != lyEnd; iLy += direction) {
    int trkltId = trk.getTrackletIndex(iLy);
    if (trkltId < 0) {
      continue;
    }
    int trkltDet = mTrackletsRaw[trkltId].getDetector();
    int trkltSec = trkltDet / (NLAYER * NSTACK);
    if (trkltSec != o2::math_utils::angle2Sector(trkParam->getAlpha())) {
      if (!trkParam->rotate(o2::math_utils::sector2Angle(trkltSec))) {
        LOGF(debug, "Track at alpha=%.2f could not be rotated in tracklet coordinate system with alpha=%.2f", trkParam->getAlpha(), o2::math_utils::sector2Angle(trkltSec));
        return false;
      }
    }
    if (!propagator->PropagateToXBxByBz(*trkParam, mTrackletsCalib[trkltId].getX(), o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, tofL)) {
      LOGF(debug, "Track propagation failed in layer %i (pt=%f, xTrk=%f, xToGo=%f)", iLy, trkParam->getPt(), trkParam->getX(), mTrackletsCalib[trkltId].getX());
      return false;
    }
    const PadPlane* pad = Geometry::instance()->getPadPlane(trkltDet);
    float tilt = tan(TMath::DegToRad() * pad->getTiltingAngle()); // tilt is signed! and returned in degrees
    float dyTiltCorr = tilt * trkParam->getTgl() * Geometry::instance()->cdrHght();
    float tiltCorrUp = tilt * (mTrackletsCalib[trkltId].getZ() - trkParam->getZ());
    float zPosCorrUp = mTrackletsCalib[trkltId].getZ() + mRecoParam.getZCorrCoeffNRC() * trkParam->getTgl();
    float padLength = pad->getRowSize(mTrackletsRaw[trkltId].getPadRow());
    if (!((trkParam->getSigmaZ2() < (padLength * padLength / 12.f)) && (std::fabs(mTrackletsCalib[trkltId].getZ() - trkParam->getZ()) < padLength))) {
      tiltCorrUp = 0.f;
    }
 
    // conversion from slope in pad per time bin to slope in cm per BC = tracklets[trkltIdx].getSlopeFloat() * padWidth / BCperTimeBin
    float slopeFactor = mTrackletsRaw[trkltId].getSlopeFloat() * pad->getWidthIPad() / 4.f;
    float yCorrPileUp = mTCorrPileUp * slopeFactor;
    float yAddErrPileUp2 = mTErrPileUp2 * slopeFactor * slopeFactor;
    float yPosCorrUp = mTrackletsCalib[trkltId].getY() - tiltCorrUp + yCorrPileUp;
 
    int nTrackletsChamber = mTracker->GetNtrackletsChamber(trk.getCollisionId(), trkltDet);
    float angularPull = (mTrackletsCalib[trkltId].getDy() + dyTiltCorr - mRecoParam.convertAngleToDy(trkParam->getSnp())) / std::sqrt(mRecoParam.getDyRes(trkParam->getSnp(), nTrackletsChamber));
 
    // Correction of y position based on angular pull
    if (mRec->GetParam().rec.trd.useAngularPull == 3 || mRec->GetParam().rec.trd.useAngularPull == 4) {
      float corrPull = -angularPull * mRecoParam.getCorrYDy(trkParam->getSnp());
      yPosCorrUp += corrPull;
    }
 
    std::array<float, 2> trkltPosUp{yPosCorrUp, zPosCorrUp};
    std::array<float, 3> trkltCovUp;
    mRecoParam.recalcTrkltCov(tilt, trkParam->getSnp(), pad->getRowSize(mTrackletsRaw[trkltId].getPadRow()), trkltCovUp, (mRec->GetParam().rec.trd.useAngularPull != 0 ? angularPull : 0.), nTrackletsChamber);
    trkltCovUp[0] += yAddErrPileUp2;
 
    chi2 += trkParam->getPredictedChi2(trkltPosUp, trkltCovUp);
    if (!trkParam->update(trkltPosUp, trkltCovUp)) {
      LOGF(debug, "Failed to update track with space point in layer %i", iLy);
      return false;
    }
  }
  if (!inwards) { // to make sure that the inward fit will start from the trkParam
    ((o2::track::TrackParCov&)trk) = *trkParam;
  } else { // propagate to the TPC outer reference
    if (!propagator->PropagateToXBxByBz(*trkParam, o2::constants::geom::XTPCOuterRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, tofL)) {
      LOG(debug) << "Propagation to TPC outer reference X after TRD inward refit failed";
      return false;
    }
    // make sure we are in the correct sector
    int sector = o2::math_utils::angle2Sector(trkParam->getPhiPos());
    if (sector != o2::math_utils::angle2Sector(trkParam->getAlpha()) &&
        !trkParam->rotate(o2::math_utils::sector2Angle(sector)) &&
        !propagator->PropagateToXBxByBz(*trkParam, o2::constants::geom::XTPCOuterRef, o2::base::Propagator::MAX_SIN_PHI, o2::base::Propagator::MAX_STEP, matCorr, tofL)) {
      LOG(debug) << "Propagation/rotation to TPC outer reference X after TRD inward refit failed " << trkParam->asString();
      return false;
    }
  }
  return true;
}
 
void TRDGlobalTracking::endOfStream(EndOfStreamContext& ec)
{
  LOGF(info, "TRD global tracking total timing: Cpu: %.3e Real: %.3e s in %d slots",
       mTimer.CpuTime(), mTimer.RealTime(), mTimer.Counter() - 1);
}
 
DataProcessorSpec getTRDGlobalTrackingSpec(bool useMC, GTrackID::mask_t src, bool trigRecFilterActive, bool strict, bool withPID, PIDPolicy policy, bool requestCTPLumi, bool itsStag)
{
  std::vector<OutputSpec> outputs;
  uint32_t ss = o2::globaltracking::getSubSpec(strict ? o2::globaltracking::MatchingType::Strict : o2::globaltracking::MatchingType::Standard);
  std::shared_ptr<DataRequest> dataRequest = std::make_shared<DataRequest>();
  dataRequest->setITSPerLayer(itsStag);
  if (strict) {
    dataRequest->setMatchingInputStrict();
  }
  auto trkSrc = src;
  trkSrc |= GTrackID::getSourcesMask("TPC");
  dataRequest->requestClusters(GTrackID::getSourcesMask("TRD"), useMC);
  dataRequest->requestTPCClusters(false); // only needed for refit, don't care about labels
  if (GTrackID::includesSource(GTrackID::Source::ITSTPC, src)) {
    // ITS clusters are only needed if we match to ITS-TPC tracks
#ifdef ENABLE_UPGRADES
    if (o2::GlobalParams::Instance().withITS3) {
      dataRequest->requestIT3Clusters(false); // only needed for refit, don't care about labels
    } else {
      dataRequest->requestITSClusters(false); // only needed for refit, don't care about labels
    }
#else
    dataRequest->requestITSClusters(false); // only needed for refit, don't care about labels
#endif
    trkSrc |= GTrackID::getSourcesMask("ITS");
  }
  dataRequest->requestTracks(trkSrc, useMC);
  auto& inputs = dataRequest->inputs;
  auto ggRequest = std::make_shared<o2::base::GRPGeomRequest>(false,                             // orbitResetTime
                                                              false,                             // GRPECS=true
                                                              false,                             // GRPLHCIF
                                                              true,                              // GRPMagField
                                                              true,                              // askMatLUT
                                                              o2::base::GRPGeomRequest::Aligned, // geometry
                                                              inputs,
                                                              true);
  o2::tpc::VDriftHelper::requestCCDBInputs(inputs);
  Options opts;
 
  dataRequest->inputs.emplace_back("corrMap", o2::header::gDataOriginTPC, "TPCCORRMAP", 0, Lifetime::Timeframe);
 
  if (requestCTPLumi) {
    dataRequest->inputs.emplace_back("lumiCTP", o2::header::gDataOriginCTP, "LUMICTP", 0, Lifetime::Timeframe);
  }
 
  // Request PID policy data
  if (withPID) {
    // request policy
    switch (policy) {
      case PIDPolicy::LQ1D:
        inputs.emplace_back("lq1dlut", "TRD", "LQ1D", 0, Lifetime::Condition, ccdbParamSpec("TRD/PID/LQ1D"));
        break;
      case PIDPolicy::LQ2D:
        inputs.emplace_back("lq2dlut", "TRD", "LQ2D", 0, Lifetime::Condition, ccdbParamSpec("TRD/PID/LQ2D"));
        break;
      case PIDPolicy::LQ3D:
        inputs.emplace_back("lq3dlut", "TRD", "LQ3D", 0, Lifetime::Condition, ccdbParamSpec("TRD/PID/LQ3D"));
        break;
#ifdef TRDPID_WITH_ONNX
      case PIDPolicy::XGB:
        inputs.emplace_back("xgb", "TRD", "XGB", 0, Lifetime::Condition, ccdbParamSpec("TRD_test/PID_new/xgb"));
        break;
      case PIDPolicy::PY:
        inputs.emplace_back("py", "TRD", "py", 0, Lifetime::Condition, ccdbParamSpec("TRD_test/PID_new/py"));
        break;
#endif
      case PIDPolicy::Dummy:
        break;
      default:
        throw std::runtime_error("Unable to load requested PID policy data!");
    }
    // request calibration data
    inputs.emplace_back("localgainfactors", "TRD", "LOCALGAINFACTORS", 0, Lifetime::Condition, ccdbParamSpec("TRD/Calib/LocalGainFactor"));
  }
 
  // request list of bad chambers and masked pads to estimate better the number of findable tracklets
  inputs.emplace_back("chamberstatus", "TRD", "CHAMBERSTATUS", 0, Lifetime::Condition, ccdbParamSpec("TRD/Calib/DCSDPsFedChamberStatus"));
  // inputs.emplace_back("padstatus", "TRD", "PADSTATUS", 0, Lifetime::Condition, ccdbParamSpec("TRD/Calib/PadStatus"));
 
  if (GTrackID::includesSource(GTrackID::Source::ITSTPC, src)) {
    outputs.emplace_back(o2::header::gDataOriginTRD, "MATCH_ITSTPC", 0, Lifetime::Timeframe);
    outputs.emplace_back(o2::header::gDataOriginTRD, "TRGREC_ITSTPC", 0, Lifetime::Timeframe);
    if (useMC) {
      outputs.emplace_back(o2::header::gDataOriginTRD, "MCLB_ITSTPC", 0, Lifetime::Timeframe);
      outputs.emplace_back(o2::header::gDataOriginTRD, "MCLB_ITSTPC_TRD", 0, Lifetime::Timeframe);
    }
    if (withPID) {
      outputs.emplace_back(o2::header::gDataOriginTRD, "TRDPID_ITSTPC", 0, Lifetime::Timeframe);
    }
  }
  if (GTrackID::includesSource(GTrackID::Source::TPC, src)) {
    outputs.emplace_back(o2::header::gDataOriginTRD, "MATCH_TPC", ss, Lifetime::Timeframe);
    outputs.emplace_back(o2::header::gDataOriginTRD, "TRGREC_TPC", ss, Lifetime::Timeframe);
    if (useMC) {
      outputs.emplace_back(o2::header::gDataOriginTRD, "MCLB_TPC", ss, Lifetime::Timeframe);
      outputs.emplace_back(o2::header::gDataOriginTRD, "MCLB_TPC_TRD", ss, Lifetime::Timeframe);
    }
    if (trigRecFilterActive) {
      LOG(info) << "Matching to TPC-only tracks requested, but IRs without ITS contribution are filtered out (used strict matching mode to constrain TPC tracks before matching to ITS)";
    }
  }
 
  outputs.emplace_back("META", "TRDTRACKER", 0, Lifetime::Sporadic);
 
  std::string processorName = o2::utils::Str::concat_string("trd-globaltracking", GTrackID::getSourcesNames(src));
  std::regex reg("[,\\[\\]]+");
  processorName = regex_replace(processorName, reg, "_");
 
  return DataProcessorSpec{
    processorName,
    inputs,
    outputs,
    AlgorithmSpec{adaptFromTask<TRDGlobalTracking>(useMC, withPID, policy, dataRequest, ggRequest, src, trigRecFilterActive, strict, requestCTPLumi)},
    opts};
}
 
} // namespace trd
} // namespace o2